土壤微生物群落生活史策略分类理论及其应用研究进展
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南京农业大学资源与环境科学学院/江苏省固体有机废弃物资源化高技术研究重点实验室

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国家重点研发计划项目(2021YFD1900300)、国家自然科学基金(42277293 & 32270125)和中央高校基本科研业务费专项资金(KJYQ2025031)


Research Progress on the Classification and Application of Life History Strategy in Soil Microbial Community
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College of Resources and Environmental Sciences/Jiangsu Key Laboratory of Solid Organic Waste Utilization,Nanjing Agricultural University

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the National Key Research and Development Program (No. 2021YFD1900300), the National Natural Science Foundation of China (No. 42277293 & 32270125), and the Fundamental Research Funds for the Central Universities (No. KJYQ2025031)

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    摘要:

    土壤微生物驱动元素地球化学循环,对促进土壤健康和生态系统可持续性至关重要。然而土壤微生物物种组成复杂、功能多样,使得基于微生物功能性状的分类和利用面临巨大的挑战。微生物生活史研究将微生物代谢特征与其生态过程联系起来,对理解微生物群落与生态系统服务功能之间的关系具有重要意义。本文系统综述了土壤微生物生活史策略理论框架的发展与应用进展,梳理了微生物生活史策略的核心理论及其发展历程,重点探讨了二分法(r-K理论和寡营养-富营养分类)和三分法(C-S-R和Y-A-S分类框架等)的核心内涵及其在土壤微生物研究中的实践价值。然而,当前的研究主要依赖微生物功能基因组成的描述性分析,缺乏对微生物功能的动态表达解析和调控机制研究,在此基础上提出土壤微生物群落生活史策略研究支撑农业绿色发展的研究方向,强调了未来需要建立微生物群落生活史策略的多维动态解析体系,解析土壤微生物生活史策略转换的驱动机制,同时完善农业生态系统服务功能的土壤微生物生活史策略响应框架,将微生物生活史策略分类发展为生态系统功能调控的核心理论工具,为应对全球变化与粮食安全提供土壤微生物组解决方案。

    Abstract:

    Soil microbial community drives biogeochemical cycles and is crucial for maintaining soil health and ecosystem sustainability. However, the complexity of microbial community composition and the diversity of microbial functions present significant challenges in classifying and understanding microbial community based on functional traits. Life history strategy theory links microbial metabolic characteristics with ecological processes, providing critical insights into the relationship between microbial communities and ecosystem services. This review systematically summarizes the theoretical frameworks and recent advances in soil microbial life history strategy, outlining the original theories and their developmental trajectory. It focuses on the two-way continuum (r-K life history strategy theory and oligotrophic-copiotrophy life history strategy theory) and the three-way continuum (C-S-R and Y-A-S life history strategy theories), highlighting their conceptual foundations and practical applications in soil microbial community researches. However, current studies primarily rely on descriptive analyses of microbial functional composition, lacking investigations into the dynamic expression and regulation mechanisms of microbial functions. Based on this, we propose future research directions on soil microbial life history strategies to support sustainable agriculture. First, integrating multi-omics technologies is essential for assessing the functional dynamics of microbial community. While current sequencing methods (e.g., amplicon and metagenomic sequencing) can identify potential microbial functions based on the genomic information, they fail to capture real-time microbial activity in fluctuating environments. A combined approach incorporating transcriptomics, proteomics, metabolomics, and single-cell Raman spectroscopy can provide deeper insights into real-time gene expression, metabolic processes, and other critical aspects of soil microbial communities. Second, elucidating the molecular mechanisms that regulating the microbial life history strategies is crucial. Microbes dynamically reprogram their functional traits in response to environmental changes, yet the signaling networks and genes governing this reprogramming remain largely unknown. Future research should focus on understanding the interactions among environmental factors, microbial gene expression, and microbial functional investments. Additionally, synthetic biology approaches can facilitate the engineering of programmable microbial strains, enabling precise control over microbial functions in complex ecosystems. Third, expanding current life history strategy theories to incorporate species interactions within ecosystems is necessary. Existing frameworks primarily emphasize microbe-environment interactions while neglecting biotic interactions, particularly in agricultural ecosystems. For example, rhizosphere microbes enhance plant stress resistance and growth by producing plant hormones such as cytokinins, yet these functions are not currently integrated into life history strategy frameworks. Future studies should explore how microbial life history strategies regulate soil-microbe-plant interactions and quantify their contributions to ecosystem services. We emphasize the need to establish a multidimensional, dynamic analytical framework for microbial life history strategies, elucidate the driving mechanisms underlying microbial life history transitions, and refine the response framework of soil microbial life history strategies in agricultural ecosystem services. We advocate for developing microbial life history classification into a core theoretical tool for ecosystem function regulation, providing microbiome-based solutions to address global change and food security challenges.

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梁书欣,邵佳慧,叶锦如,祁禹豪,张瑞福,沈其荣,荀卫兵.土壤微生物群落生活史策略分类理论及其应用研究进展[J].土壤学报,DOI:10.11766/trxb202502180068,[待发表]
LIANG Shuxin, SHAO Jiahui, YE Jinru, QI Yuhao, ZHANG Ruifu, SHEN Qirong, XUN Weibing. Research Progress on the Classification and Application of Life History Strategy in Soil Microbial Community[J]. Acta Pedologica Sinica, DOI:10.11766/trxb202502180068,[In Press]

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  • 收稿日期:2025-02-18
  • 最后修改日期:2025-06-17
  • 录用日期:2025-10-16
  • 在线发布日期: 2025-10-16
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