东北苏打盐碱地野生植物根际细菌群落特征及高通量培养*
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1.南京信息工程大学;2.中国科学院南京土壤研究所;3.中国科学院东北地理与生态研究所

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国家重点研发计划项目(2022YFD1500203)和中国科学院战略性先导科技专项(XDA28020203, XDA28110100)资助


Characterization and High-Throughput Cultivation of Rhizosphere Bacteria from Wild Plants in Soda Saline-Alkali Soils of Northeast China
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1.School of Ecology and Applied Meteorology,Nanjing University of Information Science and Technology,Nanjing;2.State Key Laboratory of Soil and Sustainable Agriculture,Institute of Soil Science,Chinese Academy of Sciences;3.State Key Laboratory of Black Soils Conservation and Utilization,Northeast Institute of Geography and Agroecology,Chinese Academy of Sciences

Fund Project:

Supported by the National Key Research and Development Program of China (No.2022YFD1500203), and the Strategic Priority Research Program of Chinese Academy of Sciences (Nos.XDA28020203, XDA28110100)

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    摘要:

    根际细菌在植物抵御逆境胁迫、促进养分吸收过程中发挥着关键作用。然而,目前关于苏打盐碱地植物根际细菌的群落结构特征及其可培养潜力仍不清楚。本研究在松嫩平原的大安、肇源、镇赉、通榆4个典型苏打盐碱地分布区采集碱蓬、芦苇、狗尾草等7种常见野生植物的根际土壤样品。通过16S rRNA基因高通量测序分析根际细菌的群落结构,并利用1/10 TSB培养基开展根际细菌的高通量培养与鉴定,评估不同类群的培养偏好特征。结果表明:根际细菌的丰度在1.79×1091.24×1010 gene copies g-1 d.w.s之间,不同植物根际细菌的多样性差异显著:蒲公英根际细菌丰度与多样性均较高;茵陈蒿根际细菌丰度低但多样性高;车前草和芦苇的根际细菌丰度与多样性均较低。主成分分析表明,不同野生植物根际细菌群落分异不显著,而采样地点对根际细菌群落结构具有显著影响。不同植物根际优势细菌类群基本一致。变形菌门(Proteobacteria)相对丰度最高,平均为26.3%,其次为放线菌门(Actinobacteria,17.2%)和酸杆菌门(Acidobacteria,11.3%)。优势属为节杆菌属(Arthrobacter)、微枝形杆菌属(Microvirga)、芽孢杆菌属(Bacillus)、沙壤土杆菌属(Ramlibacter)、斯克尔曼氏菌属(Skermanella)、红色杆菌属(Rubrobacter)、鞘氨醇单胞菌属(Sphingomonas)和类诺卡氏菌属(Nocardioides)。高通量培养共获得117个纯菌ASV,隶属于52个属,4个门。分离效率为平均每100个阳性孔获得3.1个属和7.1个纯菌株。分离频率较高的类群为Proteobacteria、Firmicutes和Actinobacteria门,以及假单胞菌(Pseudomonas)、赖氨酸芽孢杆菌(Lysinibacillus)、红球菌(Rhodococcus)、淡水杆菌(Limnobacter)等属。根际中相对丰度前8位的属有5个成功获得纯培养。因此,在东北苏打盐碱地较大地理尺度下,采样位置而非植物类型是决定根际细菌分异的主要因素。尽管不同类群的培养偏好性差异很大,高通量培养技术能有效获取大部分优势类群,是盐碱地根际细菌资源挖掘的高效手段。

    Abstract:

    【Objective】Rhizosphere bacteria play a key role in plant stress resistance and nutrient acquisition. However, the community structure and culturable potential of rhizosphere bacteria in soda saline-alkaline soils remain poorly understood. 【Methods】In this study, rhizosphere soil samples of seven common wild grass species (including Suaeda glauca, Phragmites australis, and Setaria viridis) were collected from four typical soda saline-alkaline areas in the Songnen Plain: Da"an, Zhaoyuan, Zhenlai, and Tongyu. The bacterial community structure was analyzed by high-throughput sequencing of the 16S rRNA gene, and high-throughput cultivation using 1/10 TSB medium was conducted to assess the cultivation preferences of different taxa.【Results】Results showed that: rhizosphere bacterial abundance ranged from 1.79×109 to 1.24×1010 gene copies/g d.w.s, and significant differences in diversity were observed among plant species: Taraxacum mongolicum exhibited high abundance and high diversity; Artemisia capillaris had low abundance but high diversity; Plantago asiatica and Phragmites australis showed both low abundance and low diversity. Principal component analysis indicated that while the rhizosphere bacterial communities of different wild plant did not differ significantly, sampling location significantly influenced the rhizosphere bacterial community structure. The dominant bacterial taxa were generally consistent across plant species. At the phylum level, Proteobacteria was the most abundant (26.3%), followed by Actinobacteria (17.2%) and Acidobacteria (11.3%). The dominant genera included Arthrobacter, Microvirga, Bacillus, Ramlibacter, Skermanella, Rubrobacter, Sphingomonas, and Nocardioides. High-throughput cultivation yielded 117 pure bacterial ASVs, belonging to 52 genera and 4 phyla. The isolation efficiency averaged 3.1 genera and 7.1 pure strains per 100 positive wells. Frequently isolated taxa included the phyla Proteobacteria, Firmicutes, and Actinobacteria, and the genera Pseudomonas, Lysinibacillus, Rhodococcus, and Limnobacter. Notably, five of the top eight most relatively abundant genera in the rhizosphere were successfully cultured.【Conclusion】In conclusion, at a broad geographic scale in the Songnen Plain soda saline-alkaline region, sampling location rather than plant species was the primary factor driving rhizosphere bacterial variation. Although different bacterial groups exhibited distinct cultivation preferences, high-throughput cultivation proved to be an effective method for capturing most dominant taxa, demonstrating its utility for mining rhizobacterial resources in saline-alkaline soils.

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付冰旭,蔡元锋,滕钊军,夏围围,贾仲君.东北苏打盐碱地野生植物根际细菌群落特征及高通量培养*[J].土壤学报,DOI:10.11766/trxb202511130541,[待发表]
FU Bingxu, CAI Yuanfeng, TENG Zhaojun, XIA Weiwei, JIA Zhongjun. Characterization and High-Throughput Cultivation of Rhizosphere Bacteria from Wild Plants in Soda Saline-Alkali Soils of Northeast China[J]. Acta Pedologica Sinica, DOI:10.11766/trxb202511130541,[In Press]

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  • 收稿日期:2025-11-13
  • 最后修改日期:2026-04-30
  • 录用日期:2026-07-23
  • 在线发布日期: 2026-08-13
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