基因编辑水稻对根际细菌群落组成及潜在功能的影响
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1.上海海洋大学;2.上海市农业科学院;3.华东理工大学;4.上海交通大学;5.济南天邦化工有限公司

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S123.7

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Effects of Gene-Edited Rice on the Composition and Potential Functions of the Rhizosphere Bacterial Community
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1.Shanghai Ocean University;2.Shanghai Academy of Agricultural Sciences;3.East China University of Science and Technology;4.Shanghai Jiao Tong University;5.Jinan Tianbang Chemical Co., Ltd.,

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    摘要:

    规律成簇间隔短回文重复序列及其相关蛋白(CRISPR/Cas)系统介导的基因编辑技术已广泛应用于植物分子育种,而由此引发的植物基因型变化对土壤细菌群落结构及潜在功能的影响是其环境安全评价的核心内容之一。以乙酰辅酶 A 羧化酶(Acetyl-CoA Carboxylase, ACCase)基因编辑的抗除草剂水稻 SF24HI708 及其亲本黄华占(HHZ)为供试材料,利用 16S rRNA 基因高通量测序技术解析了分蘖期与抽穗期根际土壤细菌群落结构及功能代谢通路。结果发现,水稻基因型差异和生育期均未显著影响根际细菌 α 多样性指数,包括基于丰度的覆盖估计指数(ACE)、Chao1、香农以及辛普森指数,但均显著改变其群落组成;两种水稻在分蘖期和抽穗期的根际细菌群落构建模式均以随机过程为主导,其中,漂变及未归类过程贡献大于等于68%;群落关联网络分析显示,基因编辑水稻根际细菌群落稳定性高于亲本。京都基因与基因组百科全书(KEGG)功能分析显示,与亲本相比,基因编辑水稻在分蘖期鞘脂信号通路显著上调,在抽穗期涉及脂质与多糖类物质的合成与降解代谢途径显著下调,而与能量代谢及物质转运相关的关键通路显著上调。结果表明,基因编辑水稻虽改变了根际土壤细菌群落组成及潜在功能通路,但未导致 α 多样性指数下降和群落稳定性减弱,因此,基因编辑水稻的种植未对根际微生态产生不利影响。

    Abstract:

    【Objective】Clustered regularly interspaced short palindromic repeats/CRISPR-associated proteins (CRISPR/Cas)-mediated gene editing technology has been widely applied in molecular plant breeding. However, the effects of genotypic variation induced by this technology on the structure and potential functions of soil bacterial communities constitute a central issue in environmental safety assessment.【Method】The herbicide-resistant gene-edited rice SF24HI708, carrying mutations in the Acetyl-CoA carboxylase (ACCase) gene and its parental cultivar Huanghuazhan (HHZ) were used as model plant materials. High-throughput sequencing of 16S rRNA genes was employed to characterize the structure and functional metabolic pathways of rhizosphere bacterial community at the tillering and heading stages.【Result】Neither genotype nor growth stage significantly affected the α-diversity indices of rhizosphere bacterial communities, including the Abundance-based Coverage Estimator (ACE), Chao 1, Shannon and Simpson indices. However, both factors significantly altered community composition. In both rice lines, the assembly patterns of rhizosphere bacterial communities at the tillering and heading stages was predominantly governed by stochastic processes, with drift and other processes each contributing ≥68%. Co-occurrence network analysis further revealed that the rhizosphere bacterial community associated with the gene-edited rice exhibited higher stability than that of the parental cultivar. Kyoto Encyclopedia of Genes and Genomes(KEGG) functional analysis showed that, compared with the parental cultivar, the sphingolipid signaling pathway was significantly upregulated in the gene-edited rice at the tillering stage. At the heading stage, metabolic pathways involved in the synthesis and degradation of lipids and polysaccharides were significantly downregulated, whereas key pathways related to energy metabolism and substance transport were significantly upregulated.【Conclusion】Although gene-edited rice changed the composition and potential functional pathways of the rhizosphere bacterial community, it did not lead to decreased alpha diversity indexs or weakened community stability, indicating that its cultivation had no adverse effects on rhizosphere microecology.

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邹玲丽,范一旋,梁紫藤,王璐瑶,葛蕾,王敏,孙宇,李鹏.基因编辑水稻对根际细菌群落组成及潜在功能的影响[J].土壤学报,,[待发表]
zoulingli, fanyixuan, liangziteng, wangluyao, gelei, wangmin, sunyu, lipeng. Effects of Gene-Edited Rice on the Composition and Potential Functions of the Rhizosphere Bacterial Community[J]. Acta Pedologica Sinica,,[In Press]

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  • 收稿日期:2025-11-29
  • 最后修改日期:2026-07-14
  • 录用日期:2026-09-14
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