红壤荒草地氨氧化细菌富集液16SrDNA文库的RFLP分析
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*国家自然科学基金项目(40371069);中国科学院知识创新工程项目(KZCX3-SW-427);中国博士后科学基金项目(2003033495)资助


RFLP ANALYSIS OF AOB-SPECIFIC 16S rDNA LIBRARY FROM RED SOIL ENRICHMENT CULTURE
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    摘要:

    分析红壤荒草地富集液中氨氧化细菌的种群组成,选取氨氧化细菌16SrDNA特异性引物序列,利用PCR技术对从富集液中抽提的细菌总DNA进行扩增,并建立了氨氧化细菌特异性的16SrDNA文库.用酶HhaⅠ和RsaⅠ对该文库特异性片段进行了限制性酶切片断长度多态性分析(Restriction fragment lengthpoly morphism,RFLP),随机挑选的35个特异性克隆片段被分成3个不同的RFLP类型,其中优势型占了所有分析克隆子的94%,另两个型各占3%.从每个RFLP类型中挑取一定的转化子进行测序,测序结果经GenBank检索,发现在该富集液体系文库中存在大量亚硝化单胞菌属(Nitrosomonas)细菌序列,由此推测红壤荒草地中存在氨氧化细菌,Nitrosomonas属细菌能在富集条件下成为优势菌.

    Abstract:

    Chemolitho-autotrophic ammonia-oxidizing bacteria are responsible for the rate-limiting step of nitrification in a wide variety of environments,making them important in the global cycling of nitrogen.In order to analyze the mmonia-oxidizing bacteria population structure in red soil enrichment culture,a pair of AOB-specific primers was designed,and total microbial genomic DNA of enrichment culture was extracted by the direct method of PCR-amplification template.An AOB-specific 16S rDNA clone library was subsequently constructed.RFLP analysis of 16S rDNA was conducted using enzymes(HhaⅠand RsaⅠ) to digest 16S rDNA from the library.The randomly selected 35 cloned fragments were finally clustered into 3 different phylotypes,with the most abundant phylotype accounting for 94% of the selected 16S rDNA clones and the other two phylotypes for 3%,respectively.Seven clones from 3 phenotypes were sequenced and the 16S rDNA sequences were compared with those from GenBank.Based on the Blast analysis,a lot of Nitrosomonas-like sequences were found in this library.The result shows that there are ammonia-oxidizing bacteria in the red soil and Nitrosomonas sp.is a dominant bacterium in enrichment condition.

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张丽娜,曹慧,崔中利,孙波,李大力,李顺鹏.红壤荒草地氨氧化细菌富集液16SrDNA文库的RFLP分析[J].土壤学报,2006,43(4):635-641. DOI:10.11766/200605260416 Zhang Lina, Cao Hui, Cui Zhongli, Sun Bo, Li Dali, Li Shunpeng. RFLP ANALYSIS OF AOB-SPECIFIC 16S rDNA LIBRARY FROM RED SOIL ENRICHMENT CULTURE[J]. Acta Pedologica Sinica,2006,43(4):635-641.

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  • 收稿日期:2006-05-26
  • 最后修改日期:2006-03-08
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  • 在线发布日期: 2013-02-25
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