北方黑土土壤细菌16S rDNA扩增体系的优化
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国家自然科学基金项目(N0:30571264,30230250)资助


OPTIMIZATION OF 16S rDNA AMPLIFICATION SYSTEM OF BACTERIA IN BLACK SOIL IN NORTH CHINA
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    摘要:

    采用降落PCR方法扩增目的基因,设计两次正交试验对PCR反应体系中的各组分浓度进行筛选,同时对退火时间、延伸时间及循环次数进行摸索.结果表明,适合北方黑钙土土壤细菌16S rDNA扩增体系为:在25μl体系中,10×buffer2.5μl,DNA模板20ng,Mg2+2.5mmolL-1,dNTPs0.25mmolL-1,引物0.3μmolL-1,TaqDNA聚合酶1.5U.降落PCR扩增程序为:95℃,5min;95℃,45s;65~56℃,60s;72℃,90s;每两个循环降低1℃.95℃,45s;5.5℃,60s;72℃,90s;10个循环.最后72℃,10min.

    Abstract:

    Target genes were amplified with the TD PCR method,two orthogonal experiments were designed to screen out optimal concentrat ions of various components of the PRC react ion system,while to explore annealing time,extending time and cycling frequency.Results show that soil bacteria 16S rDNA amplification system fit for black soil in North China was in 25 l volume,which was composed of 10×buffer 2.5μl,20 ng soil microbial DNA template,Mg2+ 2.5 mmol L-1,dNTPs 0 25 mmol L-1,0.3 mol L-1 primer,and 1 5UTaq enzyme.The TD PCR reaction procedure went like first keeping 95 for 5 min to make soil microbial DNA denatualized,95 for 45 s more,65~56 for 60 s,and then 72 for 90 s,and lowering the tem porature by 1 every two cycles; and starting another 10 cycles of 95 for 45 s,55 for 60 s,and 72 for 90 s,and finally staying at 72 for 10 min for extending.

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李秋红,吴凤芝.北方黑土土壤细菌16S rDNA扩增体系的优化[J].土壤学报,2008,45(2):341-347. DOI:10.11766/trxb200612250221 Li Qiuhong, Wu Fengzhi. OPTIMIZATION OF 16S rDNA AMPLIFICATION SYSTEM OF BACTERIA IN BLACK SOIL IN NORTH CHINA[J]. Acta Pedologica Sinica,2008,45(2):341-347.

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  • 收稿日期:2006-12-25
  • 最后修改日期:2007-04-17
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  • 在线发布日期: 2013-05-10
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